BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006H12LP1|AL425610
(719 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1336 0.0
>3x_Contig1776
Length = 26138
Score = 1336 bits (670), Expect = 0.0
Identities = 704/719 (97%), Gaps = 1/719 (0%)
Strand = Plus / Plus
Query: 1 gcgacgagaccatcwcaaaattcgaccagtttgccgccgagataagaaagggcgtcagta 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18586 gcgacgagaccatcaaaaaattcgaccagtttgccgccgagataagaaagggcgtcagta 18645
Query: 61 gcggcawtagtacggtaccaattggcacgccagatatagcagctagcaagactttcttag 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18646 gcggcagtagtacggtaccaattggcacgccagatatagcagctagcaagactttcttag 18705
Query: 121 gcggtaacaatgggccactttctccagagcttcgtggaagacgcagcataaaagatttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18706 gcggtaacaatgggccactttctccagagcttcgtggaagacgcagcataaaagatttga 18765
Query: 181 mcgattacctaagcgctccaggtgctatcgtggatgcctcccctagagctactaccgtgg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18766 acgattacctaagcgctccaggtgctatcgtggatgcctcccctagagctactaccgtgg 18825
Query: 241 cagtagacgccgcttcagtttctgctgcttccacagcggcatcagaagccgttgctatcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18826 cagtagacgccgcttcagtttctgctgcttccacagcggcatcagaagccgttgctatcg 18885
Query: 301 gcccgccgaccttaccgagatcmagggaatccaattccaacagcatgggtgacccggagt 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 18886 gcccgccgaccttaccgagatcaagggaatccaattccaacagcatgggtgacccggagt 18945
Query: 361 cacccagcatcccatcgacaagtaggttactcaatgtggcaataaccaaagtgagaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18946 cacccagcatcccatcgacaagtaggttactcaatgtggcaataaccaaagtgagaagag 19005
Query: 421 gtgaagatagcactgcagcgcgatagaacnntnnntntttctctatcggngattttctgg 480
||||||||||||||||||||||||||||| | | ||| |||||||| ||||||||||
Sbjct: 19006 gtgaagatagcactgcagcgcgatagaacagtatatatttatctatcggagattttctgg 19065
Query: 481 ttcatcatctttcataaaatacatatcgtaatgtaatttacagcctgggttgaattgcga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19066 ttcatcatctttcataaaatacatatcgtaatgtaatttacagcctgggttgaattgcga 19125
Query: 541 tctgcaattcggacattgcaacgaatcactgtatgcmgcaaacgacatttcaagtttgca 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 19126 tctgcaattcggacattgcaacgaatcactgtatgcagcaaacgacatttcaagtttgca 19185
Query: 601 tacgccgcatatgaccaacgggacagtttcgtcgtttatattgtacctttctgtgacgtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19186 tacgccgcatatgaccaacgggacagtttcgtcgtttatattgtacctttctgtgacgtg 19245
Query: 661 cggtaccaattcctggktgacactcgtaacatgcatagtatccgttacagcatttgaac 719
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19246 cggtaccaattcctgg-tgacactcgtaacatgcatagtatccgttacagcatttgaac 19303
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2945
Number of Sequences: 1807
Number of extensions: 2945
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 719
length of database: 10,358,551
effective HSP length: 16
effective length of query: 703
effective length of database: 10,329,639
effective search space: 7261736217
effective search space used: 7261736217
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)